Scaffold Ga0209638_1049963

Overview

Basic Information

• Taxon OID: 3300025725
• Scaffold ID: Ga0209638_1049963
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1717
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.28381
  • Long. (^o): -156.5985

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059907	Metagenome / Metatranscriptome	133	Y
F070032	Metagenome / Metatranscriptome	123	N
F082261	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209638_10499631	F070032	AGG	MYVSTMKSVNYPLALPLDFLDEFKQAAKEAGLSTAATIRQSAKLGLPKFREQISSSRVTNVAPLSDKVARKLYAEREEDMDSIRRFIAAQPKDAQ
Ga0209638_10499632	F059907	AGGA	MRAWEIWTGPVFGPHPVLLVSAQARIDRKQALVVLKGVTMRPGQPFKVDALQATLDQEDGLETQTRFDCDLLYTLEKKDLSQRRGEVVSLERRRG
Ga0209638_10499633	F082261	AGG	MVLHRWDSSTMTLTADSKGRIACRDLFPPHASFEALKEPDGRVTLFRLRREDQKPRLVKPVVRKGLLVLPMENAELDSEALDREIREERERENARLLG