NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208741_10010552

Scaffold Ga0208741_10010552


Overview

Basic Information
Taxon OID3300025723 Open in IMG/M
Scaffold IDGa0208741_10010552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2496
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038078Metagenome / Metatranscriptome166N
F043767Metagenome / Metatranscriptome155N
F045533Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208741_100105521F045533N/ADQRPTNEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLIDKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0208741_100105522F038078N/AMAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSIEEGKEDAISPDISKLSI
Ga0208741_100105523F043767GAGMENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEITTSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTEDSNYEIELDS

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