Scaffold Ga0208741_10006994

Overview

Basic Information

• Taxon OID: 3300025723
• Scaffold ID: Ga0208741_10006994
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3256
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208741_100069943	F015302	GGTGG	MNQDDIKARLAKFRQQIPAESRDEYYADTAARLDTIIGGDTQHFLRLQRVKNEWDALADAVPVGQGFLTFDDYVREYYGVKLVYDGDNVSLAYSVVDEKKHLVFVLKFNR
Ga0208741_100069947	F100256	AGG	MIRVSTADETFNRAWCNASRALPVHELERPRQYGQRWREAYRCRVDGGDEFPHTWYVFDQDEDYTWFMLKWG
Ga0208741_100069948	F089853	AGGAG	VVQDSIRGSTVKVASVVAPVISSDPVSGHRYQGWTPCIEWCDENCEGPWLFISEGVFEFEWDSDYTMFMLRWA