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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025720 Open in IMG/M |
| Scaffold ID | Ga0208197_1010490 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5293 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Japan | |||||||
| Coordinates | Lat. (o) | 37.43 | Long. (o) | 138.83 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208197_10104903 | F078767 | AGAAGG | MTNQITGITDEILTALQKAGCRTVGILPEVLMFSGNNNPFGFIMLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0208197_10104904 | F067770 | GAG | MIEFRYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLEKIAKLQTIKNKKANR |
| Ga0208197_10104906 | F020914 | AGAAGG | MAIYEKYGFAIDQILSENQALPNATSGDSTNTIELDAVADDGLHIVVCAASTTVELASGASLEIRPTIGATEGTVTTVLPSILIKEGVQSDVSWAPGEMICQFNIPAKLIGSAKYLKLTYVTSANESDDKVEAFSVRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |