Scaffold Ga0209746_1010028

Overview

Basic Information

• Taxon OID: 3300025716
• Scaffold ID: Ga0209746_1010028
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3864
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.290565
  • Long. (^o): -156.788622

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032132	Metagenome	180	Y
F042406	Metagenome	158	Y
F074600	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209746_10100282	F032132	N/A	MHDYIIEAMVKALKPTLKNPAKAKQILERFWSDKMALVWDVQDVHIAANEREVALTGKEAIKVLQELHHCHNKQCRIKWVDVTSYIEEYALGRKLTKAEVKRLVEKHILTIDQKRR
Ga0209746_10100284	F074600	N/A	MKTFSLMWTDKLRVAIDRAAPHRGYAMSLVGEDRQKVITAVNQGIDAHLEACFVPARGDRFRLQTPAGIRGRISGPRLECQVSPQSLPVLIRRLMESGDEGAESLASSICQTLEIELI
Ga0209746_10100285	F042406	N/A	MKTTLNGIRFYEEFEDKSKRKSGGTVVAALVLNGTYRSSGKVCWEALAGLFDQPNSPVAGTGVALDYLHQKCKRISQIKARAIHPALFERLDPLRNYTQR