NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209746_1004781

Scaffold Ga0209746_1004781


Overview

Basic Information
Taxon OID3300025716 Open in IMG/M
Scaffold IDGa0209746_1004781 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5945
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.290565Long. (o)-156.788622Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006577Metagenome370Y
F062296Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209746_100478111F062296GAGVLETVTLVLERAGKPMQARAIHEAACELAGEPLLWKSVKSALSAGVIGERPRFRRVGHGVYQLARDLRSSTS
Ga0209746_10047813F006577GAGMELNGARSNPRAVVELSRLGAIHDELLRKAQANPRKPRPVPPRVSPVLETVTLVLERAGKPMPAREIRAAACELAGEPLLSKSVKAALSANVAGEHPRFRRVRHGVYQLARDVRRCTS

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