Scaffold Ga0209201_1020476

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1020476
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3422
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014002	Metagenome / Metatranscriptome	266	Y
F027161	Metagenome / Metatranscriptome	195	Y
F030054	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_10204762	F030054	GGA	MSNREKWFLLIICLLLLVIMFSGESFRKKNKLIKENKTLISDYKHRINSNKLMIDSLNFELKSAKKTDTVIKIRYKQKIDSVYVYNYYDYVVFYDTLLNTNIAAADTFLCFDSISVQKITIKLVNCSLDSELLANCLIQNNLYANIINIQDSVISLKDSVNASLEDMYKQKVKKVKRQRNVATGVAFTELLLILGILVK
Ga0209201_10204764	F027161	AGAAGG	MAMNEYIKLILDNLDITYVCSVMLIGYIFTKSSLITKIKIKKRWLIAIIGVLVAIFYYFVLKVRLDVLFFSFITAQFLNLYVTEYLIDYMIKKYLQKK
Ga0209201_10204765	F014002	N/A	MEFNFNISELISIIALLIAIIGGYVNTKIQITKLVEENKNLSEKITNLDKKLSEICKKVDRIKIILAKEGLNGNE