Scaffold Ga0209201_1017626

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1017626
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3832
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044275	Metagenome	154	Y
F076810	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_10176266	F076810	N/A	MTPGPGNSSLGFSLVLQAVPSGTAWYLDLAIEGKHERVFANGCGDHPYWYRRNIYRERPEPFMDLELAKRAAEEELSKRLNRPVHIRPQVELYCPCDAPVYDYLKSVVEFARARYDPQTDSIRSVPDDRRLVSWPKSDLRQPRFYAPEDGVHVPADCRWRTICPKAREEFRKSHNQRCGLERAKRWLAWLISEYRKYGLNS
Ga0209201_10176269	F044275	N/A	MADRFPIRYEIGGKITAAVLDRLLRQLLDIQMTREYGGCDDEDSLRKEVARISGTSSLQVCHNDLAPYLTGELDLFLMEHKLPFVKRTDARHEYDGQIEWWHPWMKHLGKWEFTNTEANAIHISLESLKKALEGRKTLRQVVAELEGVAPD