Scaffold Ga0209201_1004515

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1004515
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11139
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F050262	Metagenome / Metatranscriptome	145	N
F064316	Metagenome	128	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_10045151	F050262	N/A	LGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKCQTMSVGETNVPVGDDLLPHVPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE
Ga0209201_10045154	F064316	N/A	MLGNAQEEASLEVADPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPTKLVGDGNYHWYPLAWLRWLAQWERLKTLVLVIILLALLAVYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASSEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVLPSEFPIYTLYISEVTRWRYNPATRIVSACVKGFRMSHTFSGKSGMEPYRAQMEIFWEPMSNRNKWGYYVQRLDEFYGAAAEAYDAELKTRDRTGA
Ga0209201_10045155	F037652	N/A	MDPIPYTHFWSEEPETQRRAWRPTDEVRRRLMRLWIIQALLLGAIVLVAGVLTRESKRVPPIYAKLPNGVIFETTTGNLQMDRLARTELVNNVLQILYYQEGSFNYLETVRQNVKPQLLGRFGAEMQNASKQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLAGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPNRNHLF
Ga0209201_10045156	F080330	GGA	VKKPAPFILSLLAAGTVLAGDPFSGPDANQSGLADGVRLSARVVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGRDKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGATYLWNGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAVYLSATQLEPFIANTTFHYLLTQQGTKVLLPGQTDIKYIFLQGCGIDIEGARFELRLPATGTQLNAQPQQNP