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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025708 Open in IMG/M |
| Scaffold ID | Ga0209201_1003098 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14990 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (35.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA | |||||||
| Coordinates | Lat. (o) | 41.53 | Long. (o) | -90.43 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F056466 | Metagenome | 137 | N |
| F075595 | Metagenome | 118 | N |
| F082059 | Metagenome | 113 | N |
| F102942 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209201_100309812 | F075595 | N/A | MAEKLPQSLRQRLVPLFKEILAYHWVEELTFNRLSGAAYQVLLSEENSRLTEDQAVDLAVNLTRRERLPELLARYDALVQKREQQAQKQVLGIVNNMMPEDTPNRAHVVQGTLDMLHKFPLVRSITGIRTLVQARIDNHHQDVDEDEYLALA |
| Ga0209201_10030983 | F102942 | N/A | MKERMWLNKSTMKTRMFFAVTLGVQLLLGATSSYGQTSNRPTAVLKRDTNVSNVGTSRSQEAANKGADTDRDYLVQIRNQAVQCAANTVVATNDAPTEVGNLEWTGQYAERFLRIPEGNSGKPKLVRFLIPVYREKSTKPEASVGTEDKREQDRRVTEISSTKSG |
| Ga0209201_10030987 | F082059 | AGG | MVVQMPLVDLGCLCLLPDFRQLMARFPRHIKVNMFFPPYRLALNRQVVPFVLATGNGAPILEKLRRSLRASLGQHPLGPIK |
| Ga0209201_10030989 | F056466 | N/A | VVKRYYLILSRLSLAIIILQALIFLHSGLNVQKFNRRIDQMVLDLSQKPPSDPALQPLYREAGARLAQLQQHNREHQWLLKAILLGGLLHVGVCYSLYIHFLRMGFTWTKIFLHANNLFISLLLPSPAGLAWMLAYIIGTRVYKHCCVASTFSKPCTET |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |