Scaffold Ga0209201_1001007

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1001007
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35023
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019989	Metagenome / Metatranscriptome	226	Y
F042757	Metagenome	157	Y
F045077	Metagenome / Metatranscriptome	153	Y
F090155	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_100100711	F090155	N/A	MNDDVLKAVIAAWAARGLPARLDAASAAKLLGFAEHDVQVLMRTGKLTPLGDPAPNAPKWFAAIELIQLAANRDWLSRASREVSRYWRHKRERCMRPRGLARTKADGEIARAAQLN
Ga0209201_100100712	F042757	GAGG	VETARAILTTTPQGQAVDAQFVKWLMDHQKEADVFTTVSGLVEQLTDNPAARLTAQEIAQRVQQAQQQRTASQAVAT
Ga0209201_100100717	F045077	GAG	MAKLLHLSRPAKRASNIVRTWWAMRSQRRRRNAGNGTPASPVITGLNLTESAGEPLYWFDVLIDFSFEQGRFPDGTIELYWSRGSQGWVENYVGAVSSNVRQFRHVRAFSDFENDDVSYRMRYRCGTVIGPFSPAYQWYYCAP
Ga0209201_100100725	F019989	N/A	MNTTDINKNLTAPSVTIAPRNPARGVLTFVVTLTTFKDVRSYPCRSLESATKLAERFIAGVTKPRPAAQPETTPAPEPQPVAA