Scaffold Ga0209201_1000104

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1000104
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131991
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (93.39%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F041847	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_100010445	F041847	GGAG	MKGKRDLHFGTLVVDFANAPSPEEAGRVFLRGAARAFGYGPGFLEEALDRYPTLERFEEALPAGDRDLVNLLLEERRLLSVINNLPGNISLASYDYDGERVLHFKIQPLEPKWDCENPYEEDDVRISVGTAGNAWLGEVAEMFDERAPLTGEMDEVKERLLACMEEYIALGDRILAIRRAVPAEKTREAQKWAAYYSRIQGEQEVLAELLDRWRAILGEVVEAKDLSRNQALLDLLAVYNVVNRRELAVGEDGAIYEKPLFQESYFTERAGLADEYYHNVLVYAFVEFLKVAGNRGKLQKCPRCEAVFIAAPGRAVEKECGRCRGKKAAGGR
Ga0209201_100010491	F034230	GGAGG	MQRALWVLILSGFVLLGAAAPARSAEAGPETNKLRVKVGPFFIQESEKKIPLGGTAPHAIRKGKRVNITVTVENYGKEKSEPVRLRYAETDGRAGEPRLYRVEAIEPGKTWQRTFMARWDTSGRKSVTAALVTLEDKPLADATGKPRPGTSHTGSVHLTVREM