NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1000039

Scaffold Ga0209201_1000039


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1000039 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)203794
Total Scaffold Genes174 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (40.23%)
Novel Protein Genes30 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (50.00%)
Associated Families30

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035367Metagenome172Y
F037183Metagenome168N
F037652Metagenome / Metatranscriptome167N
F038201Metagenome / Metatranscriptome166N
F038792Metagenome165N
F045053Metagenome / Metatranscriptome153N
F045301Metagenome153N
F045645Metagenome152N
F046997Metagenome150N
F049187Metagenome / Metatranscriptome147N
F050262Metagenome / Metatranscriptome145N
F051331Metagenome144N
F051827Metagenome143N
F052500Metagenome142N
F055381Metagenome138N
F056466Metagenome137N
F057304Metagenome136N
F058854Metagenome134N
F058930Metagenome / Metatranscriptome134N
F063031Metagenome / Metatranscriptome130N
F063287Metagenome129N
F063304Metagenome129N
F064316Metagenome128N
F075595Metagenome118N
F080330Metagenome115N
F082057Metagenome113N
F082059Metagenome113N
F094220Metagenome106N
F102386Metagenome101N
F103684Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209201_1000039101F094220GGAMNTGEAILRLAGIIPEHNLKEVQALASFNTWGVDSRPGRLPSILYIGEGSRDFGPPCWPFMAAHEAMHSIATFHLHTDDYHFLLYNICEDWRVNECLLGVFYEKLAKSFRETRLAILRRWEKDPLKLKSPVSQVLQHLCYLNHLSEKGPRLNASNDYLKEVLRIREEFGSAENWPLVPPNPDRFEREQENERIGKRLARIILGHRLPPRICPAELRVLMVRAGYDLSFRRGLTAPRGPENASDGPSRNPATQIEE
Ga0209201_1000039102F103684N/AMKRTRKILLLALGGLAVTLVLVLWFTPAPKPVVTRQQLKAAYIRAAQRLYRHEILSLYNPPEEAFTPHGLQLLRRIQELYSPVFLPYLVAGSVPVQQDVLYNPWFDLFILIEDSDEEINSIVLASSLAAGQTPQLQVRERFWQEFYRRYPVAQMAAFSNPKPFADTGRVILEMRNLTNRFAWPARMQVGQTRASFDLYIQRPAQAIYCTPTEPGTYVVLNFHQGCLHTNVMALPPYHVKEVHRFLVETIQNGPGQPAPNPH
Ga0209201_1000039103F051331N/AMKTLICLALLFASVLSHAEAVKLWDGKGRGMDLVTVGHKRVTVFLADGRTTVLGIPILVEKPKAAAPTAARKPATRKP
Ga0209201_1000039105F038792N/AMNTPSRKQFLELTVQFTLATEATKEALAAEYDRVVLQDAQARRPITSMLEFCMHRAGTPERAHAIFNHVLKNSRLSYWPNPELAAHLREDREIRDACARHFIVPVKASAHLLVMCGCNPHDSEGPGAVWQTLAGSKPPFPVVALSEPDRIRQALMQFAWPV
Ga0209201_1000039109F063031N/AMTSHQLKLPVIIDLQPEPEDAVLKLPGWMKYLFILLYICTLFGMGLLLKEGYGFLKLYQLKVQALRTAEQATRDIAALNQKLLENRRTQNSYEQFKYRQRTIVRPGPLLDWLPTLVGRAQRAHFITVQPAADKVNLRLTLEKAIADSVIQNPTPPPDYQLVQSGEETPKYQELPANQRPSPKNEYAAFAAQLKKQ
Ga0209201_1000039110F049187AGAAGMKSNALRAQLAAVAAILFLALVAVAPWVAGSHVLKPVSLRWHQVIKRKDGLLAEKAGLEAKLKEFQNMEEKRKANDLFQKNIDQSGLDSIQGLINNGKYPIYSFRTLQLDSKETSFSFVTQYNTLGQLLTDLWNTFQFVELSSLVMKPSPNKPEEDVVATLTVRLPQAQTR
Ga0209201_1000039122F063287N/AVIRALPQQRNRVIVSSASRNQQFTGVNWNGTSTRPIFVLVRTQSGERPLNAEGYDLLGHEGRHAAYGNKKLFRHAMDSGIDHANELLFPGLVPTMAAGLLAIWLVRKSGEQLTFKDTIKIKELILAQPEVLNGWCEVENDLFNPENKSYRIFAEPDPAALKRIVKAATQS
Ga0209201_1000039147F102386N/AMKRMKPILIMVALALANCGWGQDTNLTANAAALPVAVAAPNTTTATETFKPLARLNELPPASVVPAAGEQFKPLPRLDGQPMTARGNPAQMARQGAQVKKMLDLYKTPEGRVKIAELMTVIQLANQQPEVRAKVDEARKLVHDYIRRVAPELLPTLETMNANRETVRQNKQATDMVY
Ga0209201_1000039158F082059N/AMMRIIQSGRALVVQMPLIDLGCLCLLPDFRQLLARFPRHIKVNMVLAPYCLALKWQVVPFVLATKNQAPTLEKLRRSLRASLGQPPLKVQR
Ga0209201_1000039160F056466N/AMLSRLSLGVILLQAFIFLHSGLNVQKFNRRIDGIVSDLSRKTGSNAALEGLCREAGAQLAQIQQQNREHGWLLKAILLGGVLHVGVCYSLYIHFLRMGYSWTKVCLHTNNLFLALLLPSPAGLAWMLIYLVGTRIYKHRCIVLAFSQPCAET
Ga0209201_1000039163F075595N/AMAEKLPQSLRHRLVPLFKEILAYHWVEDLTFNRLSGAVYQVLLSQEHSSLTEDEAVDLAVNLTRKERLPELLARYDAVVQKRAQQAQKQVLGIVNNMLSVDTPNREQVRQDTLVMLRKFPLVRSITGIRKLVQARIDNHHQDVDEDEFLVLT
Ga0209201_100003942F052500N/AMTSRAQREEASGIANEIARLQGVQSAVVDDDNGYGSFDLFVKLRNRLEEQYASRRIEFVIPLHGLMARIASIAERHGARLEWHEPPRRQYSRPGHGKKLFDGYDTDSYKLSIYVPQPARENQSPAETQLGLRITQVSETSSGASGALWLCHVRTECR
Ga0209201_100003943F045053N/AMITVASYSVPGFGEISVVRQNDAGNPCCDLFAPSGEWLNEGHPFRCKPRRAQVEAFLAQRLKEALARVSRECRRLHIQQEDLDELVHEAAQADNPRLNEAPGERQQERLITKAEERACRINNRGRADQLIYLLEIYGETGVLAALREV
Ga0209201_100003948F051827GAGGVKSQIYLVQNYGGVSLEVVGGPFDPKAIEQIEGAIIQLVKEDSGLGRGGDDSLHTLEIGSDGKPEFGGFSGGYLENIRWVAAGCPPSEKPDTWDHPEFALAALETAREPQPVTIPEEQE
Ga0209201_100003950F038201N/AMAVNPAQADVFTRNVEFMVAQVAGNHAARTFRMLQTTFPGLRNFQQLRAFATLYVANGLRPLRFRPLPSDIDPVRLKGELSLRFYKGMVVLAPDERIVWRGADAYGPFDAARASRFSRQLSAESPTNDEKGHVLDPETCAPVPVGQFPFELS
Ga0209201_100003951F045645GGAVKLQEATLKALKSVTGVYAVRPIIRNKALILRPGRDGHELAQDEGEAMRVVAVSDLKPSLLSFAAINGIRVKNYTDMAAPKPRMPSAPKSAQAPDLVM
Ga0209201_100003953F063304AGGMEDMKLSNPAINGNSSPHVYNLLDQRLAQQGTPLHQIIRTYAAAVPAPPTSPEELLDQVTAVLGKWTADPAQCVKPETPLAEAHLQLMDEISKIQGPEGAARLEATLVRVVANQFARTMGSELRIPDESKLICLSDVKPANAYSAFAQRTALIGIQPHEWVRRWVESQRELFRAKAPTDAGYLRLAQRLSGPWPAEPGKGDPFQKTLATFLDGIASSTSHSHAVVVQSSLLDTFARAIRRDVRDLGLDRPTAPSPAMSMG
Ga0209201_100003954F035367GGAMVATVGMPGSPRNLSAESGGPDLKWDDMPAAVRWIFVLALDAVVCGFFGLGIALLHFLWLEYAAVRWPRIRYTEDYQASFALVCATVVFVLTALRQIKTQLECKSPRAGEMCLILVFALIAMVGMTPVPGSNFPKYLYDMNRSTKPEEGQGSVGKDEGVNPFKLKRDAP
Ga0209201_100003956F046997GGAMTSAYRTLSLIGCSLTLSAVAAAGPLTAADVRTEQDAIPRYLAQEKAEAIEMFGASQQALLRDRAMSGISRIENKLQSGPTNVVVEPNAPLLPLGEKKLVLHADVLKKSYTAYRPSNGKPLYVNTKGLRAPETYVAPEFLRTGVNILIPKGTVRVPVCLGGDELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHAALRSVPVYQCTELRSRTH
Ga0209201_100003957F058854GGAMRLCVLCLFTSALNSEAELIDHFNARWQGCAWQANRLELPGLAWQSALFPLITQGPGAFSLPSGAFVLRLCVLPLNPEDSEPILVFWGRIADLKDKPLARLFLRKRRLVWVCPIDPKGDSLFDAPRDVELETRELTPGLWATVDVLVNPLPYQQTFGWNLEMNHPQDPSKSSGTPLHLARQLTAADWSLLKIEVPRQHSTWLGQVELLAAGTPPAQLRPNILRR
Ga0209201_100003958F055381N/AMRTFFTSLFLLAALAVSGASIRNVYLPPWYDRAAFQRVELELKDLPAAFVQLDLPCTITCTNQIILVNQGHAHTTLSIDLKRTPATFPIVVLTTGTNGRMMPHQKLICHLSPVPIPFTVEVRGDTFSVTNLTEEPFVLEYARNLAITSRDDRHIVGTLHASGSIKLKGRAEIPLNPKPRS
Ga0209201_100003960F050262GAGMKITFHRRRRTTGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKAGVVQALSDTIVKYQAMGVGETNVPVCEDLLPHIPSGTIRLEKAGPANGVYTVQGSVTWRAFPYGDESFLFHEQLSLEVPE
Ga0209201_100003963F064316GAGMLGNSTEEARLEVADPKAVKPAKKVGALKLLLRQFEATGNPPLQGEEVLPLKLVGDGNYHWYPLAWLRWLAQWERVKTGILLLILLCLVAVYAVISHRRSCQVTLPEPSSELLLKAKGFDTFNQNQAEAFVIFVLNAANQSSSEGMPNLSLLDGSIDAAIYLRLQQKGMNQQLKNITPAEFPIYTLYISEVTRWRYNPATRIVSAYARGFRISHTLSGKSGMEPYRAQVEIFWEPTSNRNKWGYYVQRLDEFYGTAAQAYDTELKDLDRTGI
Ga0209201_100003964F037652GGAMERIPYTNFWSEAPEGQRRAWRPTDEVRRRLMRLWTIQALLLTAIVAVGALLAKESKRMPPIFAKLPNGMVFETAIGRLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVLNAPAKGFDAVTKGVLSKRSSKDSASAPIYIRTRWLLSADRYLLSRVEEIRPGDYYELFLAEKQRLKKLSKQELEREMGVRKNQEIPLPKRNNLY
Ga0209201_100003965F080330AGGVKRFVHFVLLLLAAGSALAQDPFQGNDAGQAGLADNVRLSTRIVENVYLMPAQITKLIFPKPVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAKADVDMHVAMDGKSYTFRLLVGREKVNYRKTYTAEGGGSSGRNLRKVPPLAPTEINTTRLIHVINQCMRDPNYASVVAKDVGSSPQGATYLWDGVEVVLQSAWHYYPQDVVILQVEVHNPTSRALYLSATQIEPYIANTTFHYLLTQQGTKVLLPGQTDIKYIFLQGYGIDIEGARFELRLPATGKQLNAQPRQDQ
Ga0209201_100003968F037183N/AMPETVSITLELPKELISRVKAVKPTWLADLTDEEYLSHVVARGNFDDYLQQLESANTAVKKLAADLNLGKKSSPTESKRAKAGQRLGNKAGPSQFGEKTATVPIT
Ga0209201_100003974F057304N/AMREVLVAVMNWLARPFPSSNAVVLSIFASLLFLAGVAVAWHPAVTEIFDVLQAPKLRIVLRIFAFLFFSCYCTTGALCRVLIQFFPEKFGQDQGHI
Ga0209201_100003975F058930GAGGMEEDRPCSIEGRNTKQRMHEINMKTLAPKLLIGLFAFLLLVTPHLALAQTSGGLTVDNFNDAANESSGLTSTLYTVTHYALYIFYLLGIIFMGIAALKFKSGDMEAMGKNLGGSVMLFLVPKIVEVIITWAAK
Ga0209201_100003990F045301AGGVRTIPYNRKINAPLRFLYYLEVFDLFVITVLGFLVPLGVSTFLPVDLPTWHMLLWLVGLAFTLIIVKIGRAPGFIQHWVTQLLRPKFYHPGKRPLPHFLLYREVYQGEVEAAAHPDMPFAADELAQIQSNVRRLRQARREADLLA
Ga0209201_100003995F082057AGCAGMEALFHPGACWLVIVDNRCTVLRIQPGGDRCQFPGENGEHSLGRIQEWLSPVWTATMLKCVQCLKRIAQQLKPGAKLDICDQCRNTVGSPRPMSYWLGYLDDQPEIVRVVEDGIHRLGEAQTYPLAHVREWLMPIWGPDMVYCPGCCQAKPRKDIVFLFHRSPKGVCKDCSEHFEFEHPEVSVRA

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