Scaffold Ga0209667_1050133

Overview

Basic Information

• Taxon OID: 3300025707
• Scaffold ID: Ga0209667_1050133
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027751	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209667_10501333	F027751	AGGAG	MANMNILRIIIFFLIIPVISHATEDLKYSYVHDSIGDRDDAEGDVTFRTHQDNGVMYEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGDQKKGYSVFARQIKVKNYPVGFETKKIINDEGRHPDFSDYDWIFKFKTESVE