Scaffold Ga0209667_1000073

Overview

Basic Information

• Taxon OID: 3300025707
• Scaffold ID: Ga0209667_1000073
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95490
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (64.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012719	Metagenome / Metatranscriptome	278	Y
F026287	Metagenome	198	Y
F077775	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209667_1000073127	F012719	N/A	MKIDYYLKWIATGILMIGAGLNSLAIYPWGPLANLVGGLTWLVVAIMWREAALITTNVVLSTITILGLTYNFIQ
Ga0209667_1000073128	F077775	AGGAG	MKKQKCSICAKLFTHNKPDTLVGKLGPIPVQFCKPCFKKVMKKDHLPLNDKRK
Ga0209667_1000073137	F026287	GAG	MGKIANKLVKKGLIYLTFLLFLFAICSCDVKSCKIRPDLEKIGDSALKNKENLTETNLQHAYMRCKY