Scaffold Ga0209374_1002539

Overview

Basic Information

• Taxon OID: 3300025705
• Scaffold ID: Ga0209374_1002539
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15558
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F015474	Metagenome / Metatranscriptome	254	Y
F094536	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209374_100253912	F009521	AGG	MKYKLIINNGTLKGFTAFRGSCLVTMKDKYKRLTNQGHKLKLIRGK
Ga0209374_100253927	F015474	GGA	MSGAFPTDPNFRSINFQDNRPTLLNQTLSGKKSARQIGAQYFSFTVQMPPIQQEKAQEIFAFLQKQKGAIGDFTI
Ga0209374_10025395	F094536	AGG	MRITVKDNLKDISKQLNKDLNQKEFNKIMARAMNYTGERTVNAERNSLESKLLNARPQTIKSVVISQFAKPQSNKLAMTVRVKDWAVKYLHYIYTGQSEPARRQGYPSPTTDGRHKKGKYGNIMKLSSKGGLLSKIDKTTDSQRKGSRFQGVPKGEGSKAYGIWERQGKKGREGLKLLVAFTPFIQHRKFIDFYKVGQKAIKNNLHKEINKQFARHLKRR