Scaffold Ga0208357_1000960

Overview

Basic Information

• Taxon OID: 3300025703
• Scaffold ID: Ga0208357_1000960
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21937
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022249	Metagenome / Metatranscriptome	215	Y
F028046	Metagenome	193	Y
F050334	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208357_100096018	F022249	GGAG	MLKRNGEDCEHPVPNYPGLLTTSEYKAYNVAVPLVAVEVQMFNERTNTLSGIDNQSAQIAEQVAAQSTQGLQSLTVKGTPESAWQIRQTLFKSSRSEMLLCSRDVEENKQFAIVEKFDPRSQYARIHGETDLHMIGTNAFALLQSFVESERAVLQLFRKDIEATVEESLSEKFPNQNHSRVVRAISARCGNQAAVESEKEKPAKNIKIRM
Ga0208357_100096020	F050334	N/A	MEFLAIMGIGTLVAIWVVANLPKSRGLHREINSFEQKPFQTPAWRKDISEVFSTDGFDYLRKLERHQDDPHHWPCPFPPPEPRKEECEYD
Ga0208357_10009604	F028046	AGG	MKLKILLLIAGVAVIGGSVTVLVIQSHSRPLKFSPPESELPAAISNYSKTFKLNTSPPIWAQPQKQGATNGSH