Scaffold Ga0209771_1046075

Overview

Basic Information

• Taxon OID: 3300025701
• Scaffold ID: Ga0209771_1046075
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F014276	Metagenome / Metatranscriptome	264	Y
F016625	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209771_10460751	F007835	N/A	LRNTREEFVLQKIEYYKVTEYMGRSNWKRHYFDTYKEAVKMFKKLKEVKRKVLIYACRDDELGELSTGINDRFKNE
Ga0209771_10460755	F016625	GGA	MRTMMMITILVLMTMTMAKSDEPINVKVKNYIVNEVNDIKEYQKTQWQKGKEQNANNWNKLKSLLGVK
Ga0209771_10460756	F014276	AGGAG	MLHRIADLCKKIDGIKKQSDKLYSLKYNNPKTSERDAEIDNLISDIQTQCLLVASDKGSYERIY