Scaffold Ga0209771_1009201

Overview

Basic Information

• Taxon OID: 3300025701
• Scaffold ID: Ga0209771_1009201
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4721
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021305	Metagenome / Metatranscriptome	219	Y
F044514	Metagenome / Metatranscriptome	154	N
F105168	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209771_10092014	F044514	N/A	MSSFKKWWKVKGQGIGFIAGIVFLNAYFLILGDLMNKHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKDIKDTH
Ga0209771_10092015	F105168	GGAG	MEVIKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0209771_10092019	F021305	AGGAG	MKKIDWKLGVIGILIGLTAWMSLNPTIKEIETIKEIEVLQTLIDSIYVEKIVEKKIFVPKYIYKTKTEIQIDTVVKEVIVDRPVEKIKTIYKDRERIQYVDVPRPEVNKWYAGFAYQYDLENYFSGANVQVLHKFKNDKMFSLDLGFRNDRLDKETGVSKLRPYVGGTIYFRLDNKK