Basic Information | |
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Taxon OID | 3300025701 Open in IMG/M |
Scaffold ID | Ga0209771_1006470 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5971 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027691 | Metagenome / Metatranscriptome | 194 | Y |
F046081 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209771_10064703 | F046081 | AGG | MFWHKGSYDFIQPEEVELEHKIQFTGEKDLSEGSCAFVENITEERVIIYWFDKLDPSKLVNTQELNQPMFINTAHPVILKNLGDKSAVVKYVDLNTVVETYVGI |
Ga0209771_10064708 | F027691 | AGGA | MKQLIIALAILFGVSFTAQADTATDQSLEARVEALENKMPSLPNGLFINGEIEMYYDEDTYSSNWDSRAEVITGLQTDIDAGAINWAGGSARFDSHYSLDTTLNNTIVEKQMGLGFGNNTRLYIGETDAQRLGFAKTPKIGVPLIITESNSRIDHNEKVVLTFGGWDNNNEFDFDTHSMNRDLPIGASIGYDANTEKLYAGATVSLMGYAEVSYMQIGDKDGITDWDNNQQGYAIGTSLYRWDIPVVLGVEMWDDKNTGTYTKEDRMDYGVMYGLTDEVQLGFHRVENDDLGTNGDYLSAVYTQGPVEMGVYYHMTESQNLGTGAITENDDSMKASIKYKF |
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