Scaffold Ga0209715_1122983

Overview

Basic Information

• Taxon OID: 3300025699
• Scaffold ID: Ga0209715_1122983
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013089	Metagenome	274	N
F023580	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209715_11229831	F023580	GGAG	MNAMNNIKLFLIRNYDSVEKASRIIGVTSNTVRNWCDNGGRNMLKHLPEISETCGATYAEIVEEVMIFEREGVE
Ga0209715_11229833	F013089	N/A	QPNGMGEIIQTEFLTPKTKKMGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDRMRLTKPGFGQGGQKNSPDIQKRIDASWAIGHAITQESDPEKILEAAEFLLSIRNTLISKL