Scaffold Ga0209532_1101394

Overview

Basic Information

• Taxon OID: 3300025696
• Scaffold ID: Ga0209532_1101394
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 985
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209532_11013941	F006383	GGAGG	MLDSTDKMWAVQQPGTLLRGRSSHHYGRLALVLEKAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIV
Ga0209532_11013944	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLITELNKSYWNVLKPDGETVFIHKSHLTKRMY
Ga0209532_11013945	F059941	N/A	QFKAYGTVLDTGYISKYDEDPKMIWVNYSKTGPQRVHVDSTMMEVVSEAR