Scaffold Ga0209532_1031069

Overview

Basic Information

• Taxon OID: 3300025696
• Scaffold ID: Ga0209532_1031069
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2372
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Planktomarina → Planktomarina temperata → Planktomarina temperata RCA23 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036552	Metagenome	169	Y
F093288	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209532_10310691	F093288	AGGA	MDTGLMQPQPNRTTTTSSPFLEQFRAIPSPTGGSPRTLEERLAALSEAELQSIMQTAKFVQMAMQMKIAASDRTMGWADLVQSMYRGMGIDRRSLIAEILDETDPLRFTPEQKQKKSSQEMGQAIYKRPEFNAAPVTTPTADDDTATALEAAIADAFPEPPSQPKQSTTFA
Ga0209532_10310693	F036552	AGGA	MAPKPISLFSDFLNMKHTNPSRYWLPVTAAQMAKAYLHHGHAYFDLHKDQSL