Scaffold Ga0209532_1027010

Overview

Basic Information

• Taxon OID: 3300025696
• Scaffold ID: Ga0209532_1027010
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2614
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209532_10270102	F059985	N/A	MIKIVLEPARNGVVKRVIDDNHGGGKEQWTSTDVYESNDDHRNKYEYIMRFFWDLCEDIGLECGNKFDKDVLRIKPEWGTHYEPTKKEVESKIKELQAEIDLLTEWKQT
Ga0209532_10270103	F008190	N/A	METNIEFNFIYSKDAVKVKSFLGNVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQIVLDRSTTTSIFYVLGNLNESTVEGIKRYVESLTAKELQYNIYHSPDINVNGSAKLFENVIEFE
Ga0209532_10270104	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSKPNVLLPVKGLIIDTQWDPINPLYQIRIIKMYDNMKYLKSHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLENRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKGWDDKFQRGDINIDKYLNSLS