Scaffold Ga0209532_1016607

Overview

Basic Information

• Taxon OID: 3300025696
• Scaffold ID: Ga0209532_1016607
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3652
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F076077	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209532_101660710	F040582	GGAG	MGLIEMNLQSIIIGYVVGVALMWSLCETLYGDNNEKRAEKDSENTRPRYDRRYHMLYGDTPE
Ga0209532_10166074	F076077	AGGAG	MFDEQDKLEITIDGLRNGDIFRNEDGVPVDECGDPIFEDDQ
Ga0209532_10166075	F053980	GGAG	MNGYELLAQFEKEIKECFTVPNHWLPLDFQDQRTDSVSLADIERKCNQRDKCTLSSFAEESIERATRVQAYRSQIDRGEEITYIPR