Scaffold Ga0209653_1055336

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1055336
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1479
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F007054	Metagenome / Metatranscriptome	359	Y
F066915	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_10553361	F066915	N/A	MNYSKLNQMSIEELRTLNSMVIDVIKSKKAMAGYETKQQLYVGANVKVNHRKLAGKQCRVEKINRTKCVISILNGYGSYNVPLSMVEVVK
Ga0209653_10553363	F002321	N/A	MVLDLNKEMAWVTFLNEGWQTVWHPVTDVMGNHLEFDDSIMNHCRSQFNNKENWISFGIAPTSQMLIQNSVRDNL
Ga0209653_10553364	F007054	N/A	SIEGVKFTSAQKKIVTLLLNGYEIVVVNSHRMNGGEMMWKNPNSSYLEHAGKVYKAFFNVFYQIKKQKGIEIPTKNFMSYQK