Scaffold Ga0209653_1041109

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1041109
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1851
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_10411092	F020020	N/A	MKKKYVIEFTHASGEKEIVELVTDNIEWSVQQWARNRHIIKHEVIEESVDNSKQMLFG
Ga0209653_10411093	F001222	N/A	MKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGALTPTQQNDIAIELEERLEQGLGEYELRVERDRNLKDKTIIGFFIYIEYFDKIIRKALSGQNPDSNVEPEETEL
Ga0209653_10411094	F003188	AGAAG	MIDPKKKLRQVLFSIHPLSYRIKVTQPDRETMNKKLFIEVMNQMRQIEERRDFMESEIGMDMTQYEDQFFAVIENLMKMHFKKEQLALIQMYLYQLVPDKEWDGTITIEQNKEEKILPFKTPDDVWDVINKF