Scaffold Ga0209653_1027315

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1027315
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2507
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F038215	Metagenome	166	Y
F064509	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_10273151	F002586	AGGAGG	MLKVKLEPNEVELALDVANKRFIGNLKMNKGFSYGYNKGLKGQLTDGFIGALGEVAYAKAMNQFYNGSYTDNLQRYTDSDFKNNIEIRTQEKKNYNFLLIRPNEKKGKYILIIKDNDKDFNFSIMGWFPFIDDMPERLTNFGHYDRPAAYKIDIKELYKIDDL
Ga0209653_10273154	F064509	AGAAG	VDNLFNNELVMTDKTNIYGDYRICCKCEMKADVVENGNDLCASCYFKHHTNTTLEEYEQRNKEIDIERERKRNKK
Ga0209653_10273155	F038215	N/A	KKSGKKKGKNYLKTSMKEIEKPSISIDELKLITFKNIVEGSRLINGVTWNKIKRLKGRNKRCLKQLSL