Scaffold Ga0209653_1019482

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1019482
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3202
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008239	Metagenome / Metatranscriptome	336	Y
F018717	Metagenome / Metatranscriptome	233	Y
F051047	Metagenome / Metatranscriptome	144	N
F060727	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_101948215	F060727	N/A	MKIKVRGEKYDVYGQFYIIPTIKVTHDKLLYGYYTIDLVWGKWGLSLTFE
Ga0209653_101948216	F051047	N/A	MSEVNPNYNPQAKFKDFAEEMQHIIETTPKEVLKKEWDDVVKEYGTNVHDKILSRTDDFIQSNRKDGEIYSHYHYDMMADFALHILETINTKER
Ga0209653_101948218	F008239	N/A	MREILLDMYEKLWNADKDKWAWNVILKDTLEKLEAKDDTEQ
Ga0209653_101948219	F018717	N/A	EHYDEKVSIERENDDLSFTEFMELVRKVAHGVGYTNETINKYFNQ