Scaffold Ga0209653_1010075

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1010075
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5131
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_101007512	F035552	GGA	MKIKDDLLISADLNNLYWVLGQLAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKILNQVMNEKMEEDVNNQF
Ga0209653_10100754	F026712	AGTAG	MRASFYPTESEQQLMMDIVINEFAQRQSPMDNYNVQEVAYRQAISDGAMRTDNYFNK
Ga0209653_10100758	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKADEFLIESYE