Scaffold Ga0209653_1006107

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1006107
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7323
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024203	Metagenome	207	N
F028320	Metagenome / Metatranscriptome	192	N
F064687	Metagenome	128	N
F066583	Metagenome / Metatranscriptome	126	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_100610714	F024203	GAGG	MINELVSKWNKQMTDTEQYHAQAIDILEDRIAKLEDKHNAVTKQNEVLMELLSKLIRGKN
Ga0209653_100610716	F028320	AGGA	MANQYRKVINITLFANSEGKATHGNSKWTPYKDGSPADIHLRKDARYSVKLFGNDDGSLGLAISEVVQGQYTDSISDGVSQPGMRSLAQSIDPPKPSPISALKDELDDEIPF
Ga0209653_100610717	F096075	GAG	MKYHSKAYYSTQEATELMFGDTPSNRKRLLRLLQNGEVKGKKFGKRWFVYASEINGEDNEVQQGWN
Ga0209653_100610718	F066583	GGAG	MKYNKAGTDFENCYVCGAKLKEVTHKRNIQRRCKSCIYHGVGEMKPVVEESQQEEEEDWSVLDDPRAVNEKEYGRVFREPTRVYTGHSSLSELVGGSSNYNHKHGPSTDGVRYTNRKKKE
Ga0209653_10061077	F064687	N/A	MLLDMPLLVMSVPMPRNNINLIRKYAKKCKTKERFKELVLSLKVLGNSNDHMAEVTLDGYWAYYNELEPAEQRMRDVTRFVHGYVSKHIQDKLFS