Scaffold Ga0209653_1002256

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1002256
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14259
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F084717	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_100225611	F004461	N/A	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGNSAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDADFKDWVFDYFAKLSAEKALTVAGTALTTEMAADASVLDYDTNATLSSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0209653_10022564	F084717	N/A	VNDLTTIYELFEQFGTNHSMVSEFKLLNSLDDLENIQINHRGLFIALEDANISRDGGSPIYDVNFNIVIVDKVAVDQPLALINSNQENLFVMGQLQDYFIQNLDGEQSFQEVSMRGFSSEDYNITASVSNATFVVGRNPYLRDIDI