Scaffold Ga0209653_1001381

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1001381
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19598
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005689	Metagenome / Metatranscriptome	393	Y
F019481	Metagenome / Metatranscriptome	229	Y
F047705	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_100138117	F005689	N/A	MAAGLMGLLGLIVVDEFMVAAEHNAELDQNIIELLQMSITGIIGVVAGYVSGKG
Ga0209653_10013818	F019481	GAGG	MYDNVLDDIEAVFNSATWTVNNIDIYPDNYQGTISDQTEFCRLNVLPSNSEHYAYGGNKQTEGLVAIKIFVKAGEGQARIMAIADILDVSLQNKKLTNGTELGTSYLNVEGLDPSNKALYSARYLIPFKLYGE
Ga0209653_10013819	F047705	GGAGG	MSLSAKITAAVNKAFIAADDIVKQGVLSTKSVSGYDFGSRQTVSTITSQTVDVIIQSTQKPSGEGFTTTAVMRSGVDISVYDVLTVESKVYNIVDYTDNNFTIEAILTKEVQ