Scaffold Ga0209406_1012953

Overview

Basic Information

• Taxon OID: 3300025694
• Scaffold ID: Ga0209406_1012953
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4054
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040578	Metagenome / Metatranscriptome	161	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209406_10129531	F040578	N/A	GKTIDLDWDRERGFVAVEIIDEAGKAGKSAKATFTLKK
Ga0209406_10129534	F043623	AGG	MFKRIKKTEDDPTLEQAQKFVKGWVERLVLSTGTLLVDEEARMKRGIKKNKAASFLANKDGYPKILGPAIFIPHEVKSEWY