Scaffold Ga0209406_1000031

Overview

Basic Information

• Taxon OID: 3300025694
• Scaffold ID: Ga0209406_1000031
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160636
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (29.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F025258	Metagenome / Metatranscriptome	202	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209406_100003164	F023615	AGG	MNRFELEDAMSNLHQIGEDIDTIIYAIGDSPIKHTEDQLLNMLIGIKQLHDTRYQRMWSVFEQLIKEKKIS
Ga0209406_100003165	F016956	N/A	MIETYERWKAPKEVALKIIDLALEHIKKVEVNPEVKTEGDNFDYWNSYELEDGTYVDYNIHCGDEWTRLKQDGSGEYEYTDPSTWSWDVACYAVDPPNEEREYHQIDTGREQYLFSYNKSYGNREVEVEDEL
Ga0209406_100003171	F039679	N/A	MSAKDSHLTIREDLIEESVSVPVWFLDYKEDTHVEDSPTLNIDCDYSTDGEELNPWGANIIVKITDPSQVDKYGNPWKDRLAFAMSVDFDWN
Ga0209406_100003193	F025258	N/A	MSKYKPKSFTKEIYEEIKIKMDSPFDEKRTLCNVLKLAYKCSKEESFNLKATRALILEALWMGQRMSDALTKKRKENFHFELSQQDEEEDPFSVDWSNLDGRNVAQGNWD