NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209505_1010119

Scaffold Ga0209505_1010119


Overview

Basic Information
Taxon OID3300025690 Open in IMG/M
Scaffold IDGa0209505_1010119 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4172
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004292Metagenome / Metatranscriptome445Y
F062683Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209505_10101191F004292AGGLSDNIPESNKIYKDNSDTKFVAFDRIYGNIYKQLILIQKNGSTYKGRIDKKSIKLSDGTLGHVHVTADNRWFDSCGMPISKPANLITHK
Ga0209505_101011914F062683N/AEWRTLGKLDIMGYTNTFDSFDSPILAHPGAYFFQKSKENHAFYWGLPFLAIYDTIKTLLTHKQKRTYDNNI

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