Scaffold Ga0208019_1031600

Overview

Basic Information

• Taxon OID: 3300025687
• Scaffold ID: Ga0208019_1031600
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1969
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F044460	Metagenome / Metatranscriptome	154	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208019_10316001	F022875	N/A	MKLNLTEETKENIRVRAKAHINSTDPSTDHWDSIETPDGFVDFNIWQDDEEWIVTCYDTYHSTDDGCVHTDTSTFKRLAL
Ga0208019_10316002	F009459	N/A	MSRELTLEPSVMIEELMYYIHQNEMGGDFIDPDNRFFPLYLELQKLLDKVNNDRHDLYVSVKNYEAK
Ga0208019_10316004	F048912	AGG	MRDYDSWLTSFLDYEDDDGLTDEEREELKDLYEAWVISQYEQTLD
Ga0208019_10316005	F044460	N/A	MDETDEHEEVMEQLDESISALVTKGYDFFWSNNELCYDSELKVVRSDRPRVRPPTWFCFMNEDERERLTKEVK