Scaffold Ga0208019

Basic Information
Taxon OID	3300025687 Open in IMG/M
Scaffold ID	Ga0208019_1000882 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025687 Open in IMG/M

Scaffold ID

Ga0208019_1000882 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16326
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (57.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

16326

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (57.69%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F015724	Metagenome	252	Y
F080002	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208019_100088215	F015724	AGGCGG	MARRNGSDDFGWHTHQPKKSKFGFSSFEGASSTHQLSSPMPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGIVGVGAALPGICYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYAIKSVTKTSDTVYAIELTSNFGPPISFFQGEVISDRFAADGTEKTSYNNYTVVGVGNGTTPLEPGFAPIYNSIFISLDTNNSWSVIDNETLSTPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRRYPYTLPQDLKPGQYDAGADYQSGRTSPSRDYPGFSRDFGFLYVKKILDLPSYSDGSKVYSDPNLIYFAPRWCKHIYASFWDLQNRFGNDVFSPAWLSQPSDEPIDDRYREEFEINLAKQTTFEKRQQKLRWWEKYSPSQNTVPNHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDQYNPFAPPDPEATPKLDGGTYSNGVLVSGASLIYDGGQYSAGALIPYPSYPSLINGGTY
Ga0208019_10008822	F080002	N/A	VITTYTSTAYSGNSTNDLRRPCLWEHDFKIDNLPAWIYTDNQPPKDITDCEAKISSLEYTIRDIELQIEIRELELKTGSSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKSQRSALDSPAKLDKLIELLIEDPADFETKARALLN
Ga0208019_100088223	F010682	GGAG	MVYTPQTNWKYDKNLYHPIQSGPQRTGDNLDLTDTYRTVSSGYVTPSGINQTWYGVLDEGADFGRIPVGPPNISGYFTSEWRAVPPAVSGYWNNFNNTYLGFVPLFVGDTEYPGLLDIYDGFRAQSLTSTSNATVQTALGPQPGLRDFGAYTWFGPAVPDNQNYTPFNTPKGNEPYAYNEDTGKFEGQGLTGGPGTYQRVQFPMLTNPTNDKSGSRAAWVYHYPVYCRTFVESVRTGVPGQMDTVLRTSYRGKSVRYVPNYGSVYGVLGEGVRNMVRTFSPGTKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208019_1000882

Overview

Ecosystem & Geography

Associated Families

Sequences