NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209506_1044523

Scaffold Ga0209506_1044523


Overview

Basic Information
Taxon OID3300025686 Open in IMG/M
Scaffold IDGa0209506_1044523 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1641
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080199Metagenome / Metatranscriptome115N
F103498Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209506_10445232F080199GGAGMKTVVYGVEETNAKLSQILAAVQENVDNTLDLFSSDMTKEIKDSAPYDTGRYMSSWFYERKETLKYAIISQNSYVPYNIYLVFGTEKFKQIANEPKYKYSDPERGIIHDVRQIKFIYSIKLAQLINRMNLLNVNISLAGL
Ga0209506_10445234F103498GAGGMDSIESCELQHCRLRTDILCEIQRREEKQDERFHALIDELRLDWKETKKEVISIKDTMIQGFIALIVAIVGVYVSYLLLNVNGFF

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