NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209095_1044498

Scaffold Ga0209095_1044498


Overview

Basic Information
Taxon OID3300025685 Open in IMG/M
Scaffold IDGa0209095_1044498 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1642
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021539Metagenome / Metatranscriptome218Y
F021862Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0209095_10444981F021862GGAGGMFTRLRGWFDAWKKNLFDAYDPPKPTVYKLGNKRYIKKKILNRPKGQKGPYLK
Ga0209095_10444984F021539N/AMNKELEKYLIIVLLLILVGLSACSPNPHADKQPPHETEEEMTDQITKDMEAMDREKEQADNPGPTNFEGIVDVLGCMFAPDDCPLKKRQEEQKLDR

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