NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209652_1112997

Scaffold Ga0209652_1112997


Overview

Basic Information
Taxon OID3300025684 Open in IMG/M
Scaffold IDGa0209652_1112997 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010570Metagenome / Metatranscriptome302Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209652_11129971F016593N/AMKRLKAGAVNTLSFVKLGDFTINSFDITLEKVVGVGSLTITNLTDLNSLDSCKDFISINIDLLSNELSGGEYILTLTNNGNNYSFLCEVQSYQYNNLTNGIYSDSVVLSGDVDAPLPDEQQPEN
Ga0209652_11129972F010570N/AIMRTFRKYQFGSKGAATTKINALGVDEEGNPTHSHAIVHLGNLVEQEGTYDEEGNELTAPVLSATYHIDVLWDGEAHSSWDGQLVWCAPMGVHTFGSSSAIAEWTETCKSLHPEFFPEPSEELL

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