NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209652_1016490

Scaffold Ga0209652_1016490


Overview

Basic Information
Taxon OID3300025684 Open in IMG/M
Scaffold IDGa0209652_1016490 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3927
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020896Metagenome / Metatranscriptome221N
F028350Metagenome / Metatranscriptome192Y
F032478Metagenome / Metatranscriptome180N
F035971Metagenome / Metatranscriptome171N
F037204Metagenome168N
F075986Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209652_101649014F020896AGGAGMANKKEKTQWEINQEQAAATWKSMTPKQQQAVLEMLQAFVPIRHSVSEFCEISYEDLRNMDQAWYTLRRLLVDDNVEVKYWGY
Ga0209652_10164902F037204AGGAGMNVEIYKSLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIITYLQFIYDTEKGNEN
Ga0209652_10164903F028350GGAGMRIKPINPVAKAVAQSRRRAQAVPDKTKYNRKKDKHNANQSRENEVTESETPQSKA
Ga0209652_10164904F035971AGGAGMGNLTWNEIADTELDKRYMDMYGLSKLDMEDMLHEDMKCMLAMSILSDAQHVMEYDVEQARKFINRAKYVIRHIPTINNTTTQTN
Ga0209652_10164906F032478AGGMYWEVGIKMDGVSGVYNVHPQPLDQPIWNHAVEHALDMAQAMYPDKHIELEFVKEFETA
Ga0209652_10164908F075986AGGAGMTYDDDTIANACMECVNDWDMDTLLQFAYDEMFHHYTEVASPESLKSFMEEMGIDT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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