Scaffold Ga0209652_1016179

Overview

Basic Information

• Taxon OID: 3300025684
• Scaffold ID: Ga0209652_1016179
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3988
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078573	Metagenome / Metatranscriptome	116	Y
F089431	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209652_10161794	F078573	N/A	MRLARWVIGTYLLDGFKNKIKKVAHWAEGRHILLQILVWALIICVGVIILTLMWLFGTAFGEFIMEEWGDQGLDLE
Ga0209652_10161795	F089431	N/A	MKKNTGKNWYSGDVVKDLVEKVDIDNQVKKQGDTPQDSNYEDEMYSAEQMERQKDMDNIFKVDGVPSRWEHNKLRSTWHFDPFGDPQEQSFVVPCRFQGDFSVAIDYALQEAKEMTIGNYRSRNDSKQDQDMHDGEIIDAVTASGKDDVSCMFYDKVVRTKFNKDTGAKEVLENRIPEYDILFNVIRELEVEVHQSRLHIQRLSQVTPIHIDNQMRYARPGWDKVWRDAGADKNPLKLRRFLIHLQDWTQGHVWQFGNTYHQGYKAGTCTTYDWCNMPHGTANFSFTPRVTFQITGFVGDKCQWMIDNPDPNRIINV