Scaffold Ga0209652

Basic Information
Taxon OID	3300025684 Open in IMG/M
Scaffold ID	Ga0209652_1013423 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025684 Open in IMG/M

Scaffold ID

Ga0209652_1013423 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4606
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4606

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F056899	Metagenome / Metatranscriptome	137	N
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209652_101342310	F092935	N/A	MNSIAEEKNNTHIHSLILDRKVAFANLVRAYLRFNVSDALNIVVEKDGNISINGKYYKFDVSDYTGCTENYIFFNPSSGRIVIEGNGVSRVYKVDVDLLDY
Ga0209652_101342312	F016811	N/A	MSEEEKAEELKQGQTIFDIGVRLAWKKKRGNGYTNMYLGTEDRPFQFVTRAKDINAINRNPEMIAKMMAFNGLTGKSVYDFHIAKEFYRKEISKSFAHKEEDYEKEFGK
Ga0209652_10134234	F008384	N/A	LKKNTRYDKLAIEREAILSAKQGRITEPLGEFILQRAIEIAGSAFVTDGNEELKQSLIDSAVMRSCEKFLYYYQGGKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYVVCIEDGEKFTRLQRYVKDSYLSQQL
Ga0209652_10134235	F024348	N/A	LTPTRQIGFAHHIDMSLDQYYEELTNDEADFILDIYNVIDRMVLNGRPVTLVGLGYELGVNPQELSDHLPTIIQILNKVEEEYQIR
Ga0209652_10134236	F013231	N/A	MINQRNYQTCKLIKNRIDLYLYEMAKLFTNIGTDSTVEEIQEAYRREKEYIELIAELDPDKADRLRSSY
Ga0209652_10134238	F056899	AGGTGG	MAKRNTFVIASISGDYGQDIVMKYLKDKGYKVEEAPKELFYDWDVKANKAGRTVTIEVKYDSKAYMWAARRGIPEQPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGDKDIGFVFDRVQLLQHLQRSNYKVVGNGATGDDNAEGWIPPLHELLVARYGYKATIDLTPYGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209652_1013423

Overview

Ecosystem & Geography

Associated Families

Sequences