Scaffold Ga0209652_1008774

Overview

Basic Information

• Taxon OID: 3300025684
• Scaffold ID: Ga0209652_1008774
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6286
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022785	Metagenome / Metatranscriptome	213	N
F100945	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209652_10087742	F022785	AGGAG	MAVEHSVAKLEAQQEAMASDIHDMKSALSSIADSLRNLSGIEQRQVHLTDSIKRAHDRLDEVQAIIKDEIKGHEKRLQAIEINLAKNQWIERVIMAVIMGVIGLWIKGGV
Ga0209652_10087743	F100945	GAGG	MSEIIEQVVEEVVEPKKTDYFIKLNSEADLPTVFSAFYKQDYVTVVDEETGEETQTPEGEPYLVTHTHDYAIDVVGVIHEPTGNMLTDDEGNEYAETAPVDGWHVNVRLVGDAMRETVEALDALYGVVPNSPSRVFL