Scaffold Ga0209652_1004018

Overview

Basic Information

• Taxon OID: 3300025684
• Scaffold ID: Ga0209652_1004018
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10470
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F042350	Metagenome / Metatranscriptome	158	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209652_100401813	F042350	GGAG	MPGRESEHFRGYLKGVAAIMNLISSDKVKRLDKSNVLRYARELVEAEREREANAPRNY
Ga0209652_100401818	F002502	AGGA	MENITVGSQFTTQKSGVSGTVQEIVKNSNGTSRVRLSVDGQDRWTTVK
Ga0209652_100401822	F099390	GAGG	MKDGTYIVGLDDQGVPMLSNRINMTDGYWVSDDTGVSVHGGLDSDGIVDALKLMDIESGEIVGIWESQGISYIDRSYHFRQKNTAMKVAEKFEQISIWDNANSKALDIRYG
Ga0209652_10040184	F021020	AGGAG	MSETISLNNSIVTNNYDLNIWDRRGYETEYREEGWEISVYQYPYIGASYGSGTFMKDYTITLTPSETKRLTLGWGEDLGGDYCEDSDFWLDKDTFFQTYTDIPERVANLLWALPSYEQFDAFRKVE