NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209652_1001437

Scaffold Ga0209652_1001437


Overview

Basic Information
Taxon OID3300025684 Open in IMG/M
Scaffold IDGa0209652_1001437 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19383
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (24.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012654Metagenome278Y
F085639Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209652_100143717F085639N/AMSQIKYHVQNLLNVTYVGTVMVGYINDAVAILAGLTLVWWNVERALKARKERQE
Ga0209652_10014374F012654AGGMTVQQTKKYNELLNQYEARTELTPGQCQLLYTLACVIIEEQDLQAYCDQHGTCYQVIGKSGDTYSRMRPEWQQLKEARHRKQIIITRLENWIGEGKPGQDEHADIFG

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