NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209718_1193984

Scaffold Ga0209718_1193984


Overview

Basic Information
Taxon OID3300025682 Open in IMG/M
Scaffold IDGa0209718_1193984 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016798Metagenome / Metatranscriptome244Y
F091896Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209718_11939841F016798N/AMKKLLFIFFVIFISCNKVEFKQLQRSYVISNFIELNDDLDYKLIYFCDKYDAFEHFYDIKYTIYNEIGEHNYYKDMQTRMAVVSHTKDTGTCQFQHRTFYYLAEKYDIKGANILSESQQITVMVLAFKDGR
Ga0209718_11939842F091896N/AIINIQDSVISLKDSINASLETMYKQKVKKVKRQRNIATSIAFTEFLLIIGILVK

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