Scaffold Ga0209718_1061734

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209718_1061734

Scaffold Ga0209718_1061734

Overview

Basic Information
Taxon OID	3300025682 Open in IMG/M
Scaffold ID	Ga0209718_1061734 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1370
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	43.77	Long. (^o)	142.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067770	Metagenome / Metatranscriptome	125	N
F078767	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209718_10617342	F067770	GAG	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSVEVQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLEKIAKLQTIKNKKANR
Ga0209718_10617343	F078767	AGAAGG	MTNQITGITDEILTALQKAGCRTVGILPEVLMFSGNNNPFGFIMLNSETTENDNGGILTQLLDISIFIITQNGINKMKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLV

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