Basic Information | |
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Taxon OID | 3300025682 Open in IMG/M |
Scaffold ID | Ga0209718_1033600 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2209 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → environmental samples → Odoribacter sp. CAG:788 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan | |||||||
Coordinates | Lat. (o) | 43.77 | Long. (o) | 142.37 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F023862 | Metagenome / Metatranscriptome | 208 | N |
F036250 | Metagenome / Metatranscriptome | 170 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209718_10336002 | F036250 | N/A | MSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLTHNRMNPAASKAVFWIKPPAIETLPSEGIHWRVPAIVAAGNLTTVLTVIDNFINNYSQASYWRNIRPLPPSEIGIWDGWEAVAVDLFIDWNHICETTLP |
Ga0209718_10336003 | F023862 | N/A | MRIKVQKKWYNVKSTWSELTIADAQKLAEHEPPSEYLKYLKNEIDGLTPDIEMKVLAWIGEILPIISDIPAEVIESLMPTDRWVILKSLMHIVSGIYLQIPYDLNPDKLSDIFLVEGDLYHVPTVRRVYNKDIYFSAFNFKTFSELLEIQQLSDNIVKNAAMLCALVLRKAGEEGITEDEKLRRAEIISNMSMLDFWRVFFSLMRGLEQSVHYTLLCSLRESEKVMRHHLLIQLWKKYYYWPVRRLGNLITCGFKKVFMRH |
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