Scaffold Ga0209718_1033600

Overview

Basic Information

• Taxon OID: 3300025682
• Scaffold ID: Ga0209718_1033600
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2209
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → environmental samples → Odoribacter sp. CAG:788 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023862	Metagenome / Metatranscriptome	208	N
F036250	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209718_10336002	F036250	N/A	MSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLTHNRMNPAASKAVFWIKPPAIETLPSEGIHWRVPAIVAAGNLTTVLTVIDNFINNYSQASYWRNIRPLPPSEIGIWDGWEAVAVDLFIDWNHICETTLP
Ga0209718_10336003	F023862	N/A	MRIKVQKKWYNVKSTWSELTIADAQKLAEHEPPSEYLKYLKNEIDGLTPDIEMKVLAWIGEILPIISDIPAEVIESLMPTDRWVILKSLMHIVSGIYLQIPYDLNPDKLSDIFLVEGDLYHVPTVRRVYNKDIYFSAFNFKTFSELLEIQQLSDNIVKNAAMLCALVLRKAGEEGITEDEKLRRAEIISNMSMLDFWRVFFSLMRGLEQSVHYTLLCSLRESEKVMRHHLLIQLWKKYYYWPVRRLGNLITCGFKKVFMRH